STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Asuc_2111KEGG: msu:MS1757 membrane protein. (223 aa)    
Predicted Functional Partners:
bamC
NlpBDapX family lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.774
Asuc_0597
PFAM: Uncharacterized lipoprotein; KEGG: msu:MS0312 uncharacterized lipoprotein.
  
     0.774
Asuc_0932
DNA polymerase III psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.774
Asuc_1781
KEGG: hdu:HD0607 hypothetical protein.
  
     0.774
Asuc_1112
PFAM: protein of unknown function DUF991; KEGG: hit:NTHI1471 hypothetical protein.
  
     0.771
Asuc_1497
PFAM: protein of unknown function DUF1043; KEGG: pmu:PM0688 hypothetical HI1628.
  
     0.768
Asuc_0528
TIGRFAM: cell division protein FtsN; PFAM: Sporulation domain protein; KEGG: msu:MS0450 cell division protein.
  
     0.767
Asuc_0999
KEGG: msu:MS0837 TorD protein.
  
     0.766
lptC
Protein of unknown function DUF1239; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. Belongs to the LptC family.
  
     0.765
Asuc_1259
PFAM: protein of unknown function DUF440; KEGG: msu:MS1016 hypothetical protein; Belongs to the UPF0263 family.
  
     0.765
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.