STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHPFAM: ribosomal protein L34; KEGG: msu:MS0484 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: msu:MS1762 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.994
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
  
 0.993
rpsP
PFAM: ribosomal protein S16; KEGG: pmu:PM1294a 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.992
rpmG
PFAM: ribosomal protein L33; KEGG: msu:MS1943 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.991
rpmB
PFAM: ribosomal protein L28; KEGG: msu:MS1942 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.989
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.989
rpsI
PFAM: ribosomal protein S9; KEGG: hdu:HD1493 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.987
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
  
 
 0.987
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.983
rpmJ
PFAM: ribosomal protein L36; KEGG: msu:MS2027 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.982
Your Current Organism:
Actinobacillus succinogenes
NCBI taxonomy Id: 339671
Other names: A. succinogenes 130Z, Actinobacillus succinogenes 130Z, Actinobacillus succinogenes str. 130Z, Actinobacillus succinogenes strain 130Z
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