STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCAG_00910Small nuclear ribonucleoprotein U2A. (266 aa)    
Predicted Functional Partners:
HCAG_00407
Matrin-type domain-containing protein.
   
 0.998
HCAG_00841
Pre-mRNA splicing factor ATP-dependent RNA helicase PRP43.
   
 0.997
HCAG_02553
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
HCAG_02780
Small nuclear ribonucleoprotein G.
   
 0.996
HCAG_03703
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.996
HCAG_04114
RRM domain-containing protein.
   
 0.996
HCAG_04631
U2 snRNP component HSH155.
   
 0.996
HCAG_05173
CPSF_A domain-containing protein.
    
 0.996
HCAG_01049
Sm domain-containing protein.
   
 0.995
HCAG_01196
Uncharacterized protein.
   
 0.995
Your Current Organism:
Histoplasma capsulatum NAm1
NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1
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