STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCAG_00981Uncharacterized protein. (318 aa)    
Predicted Functional Partners:
HCAG_00485
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
    
 
 0.653
HCAG_08701
Uncharacterized protein.
   
  
 0.598
HCAG_02930
FAD-binding FR-type domain-containing protein.
 
    
 0.519
HCAG_00976
Pre-mRNA splicing factor cef-1.
 
      0.484
HCAG_05142
Protein transport protein sec22; Belongs to the synaptobrevin family.
 
      0.454
HCAG_02966
Uncharacterized protein.
      
 0.450
HCAG_00940
Uncharacterized protein.
 
      0.416
HCAG_05885
AD domain-containing protein.
      
 0.416
HCAG_02019
Zn(2)-C6 fungal-type domain-containing protein.
      
 0.414
HCAG_00982
Ubiquitin carboxyl-terminal hydrolase.
 
 
    0.408
Your Current Organism:
Histoplasma capsulatum NAm1
NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1
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