STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCAG_04114RRM domain-containing protein. (190 aa)    
Predicted Functional Partners:
HCAG_00910
Small nuclear ribonucleoprotein U2A.
   
 0.996
HCAG_02553
Small nuclear ribonucleoprotein Sm D2.
   
 0.995
HCAG_02780
Small nuclear ribonucleoprotein G.
   
 0.995
HCAG_01049
Sm domain-containing protein.
   
 0.994
HCAG_00813
116 kDa U5 small nuclear ribonucleoprotein component.
   
 
 0.986
HCAG_02506
Uncharacterized protein.
   
 
 0.985
HCAG_03643
Pre-mRNA splicing factor prp1.
   
 
 0.985
HCAG_08381
Pre-mRNA splicing factor CWC2.
    
 0.985
HCAG_00976
Pre-mRNA splicing factor cef-1.
   
 
 0.984
HCAG_03057
Cell cycle control protein cwf14.
   
 
 0.984
Your Current Organism:
Histoplasma capsulatum NAm1
NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.