HCAG_05701 protein (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCAG_05701

Uncharacterized protein. (503 aa)

Predicted Functional Partners:

HCAG_05808

0.952

HCAG_06091

0.891

HCAG_04350

0.845

HCAG_01151

0.836

HCAG_06566

0.812

HCAG_05807

0.806

HCAG_00820

0.800

HCAG_04225

0.743

HCAG_06132

0.722

HCAG_08705

0.705

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00820	HCAG_01151	A6QTW4	A6QUU5	Uncharacterized protein.	Uncharacterized protein.	0.930
HCAG_00820	HCAG_04225	A6QTW4	A6R3L7	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.786
HCAG_00820	HCAG_05701	A6QTW4	A6R9R3	Uncharacterized protein.	Uncharacterized protein.	0.800
HCAG_00820	HCAG_05807	A6QTW4	A6RA19	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C19 family.	0.719
HCAG_00820	HCAG_06091	A6QTW4	A6RAV3	Uncharacterized protein.	Polyubiquitin.	0.771
HCAG_00820	HCAG_06132	A6QTW4	A6RAZ4	Uncharacterized protein.	Uncharacterized protein.	0.744
HCAG_00820	HCAG_06566	A6QTW4	A6R8C5	Uncharacterized protein.	Ubiquitin/79aa fusion protein.	0.878
HCAG_00820	HCAG_08705	A6QTW4	A6RGD9	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.729
HCAG_01151	HCAG_00820	A6QUU5	A6QTW4	Uncharacterized protein.	Uncharacterized protein.	0.930
HCAG_01151	HCAG_05701	A6QUU5	A6R9R3	Uncharacterized protein.	Uncharacterized protein.	0.836
HCAG_01151	HCAG_05808	A6QUU5	A6RA20	Uncharacterized protein.	VHS domain-containing protein.	0.988
HCAG_01151	HCAG_06091	A6QUU5	A6RAV3	Uncharacterized protein.	Polyubiquitin.	0.979
HCAG_01151	HCAG_06132	A6QUU5	A6RAZ4	Uncharacterized protein.	Uncharacterized protein.	0.869
HCAG_01151	HCAG_06566	A6QUU5	A6R8C5	Uncharacterized protein.	Ubiquitin/79aa fusion protein.	0.979
HCAG_01151	HCAG_08705	A6QUU5	A6RGD9	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.880
HCAG_04225	HCAG_00820	A6R3L7	A6QTW4	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.786
HCAG_04225	HCAG_05701	A6R3L7	A6R9R3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Uncharacterized protein.	0.743
HCAG_04225	HCAG_05808	A6R3L7	A6RA20	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	VHS domain-containing protein.	0.915
HCAG_04225	HCAG_06091	A6R3L7	A6RAV3	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Polyubiquitin.	0.642
HCAG_04225	HCAG_06566	A6R3L7	A6R8C5	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	Ubiquitin/79aa fusion protein.	0.610