STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DBP5ATP-dependent RNA helicase DBP5; ATP-dependent RNA helicase associated with the nuclear pore complex and essential for mRNA export from the nucleus. May participate in a terminal step of mRNA export through the removal of proteins that accompany mRNA through the nucleopore complex. May also be involved in early transcription (By similarity). (497 aa)    
Predicted Functional Partners:
HCAG_03736
NUP214 domain-containing protein.
    
 
 0.990
HCAG_01823
Uncharacterized protein.
    
 
 0.971
HCAG_01097
Uncharacterized protein.
    
 
 0.868
HCAG_01986
Poly(A)+ RNA export protein.
   
  
 0.576
HCAG_02018
Uncharacterized protein.
    
 
 0.575
HCAG_04525
Nsp1_C domain-containing protein.
   
 
 0.526
HCAG_01673
RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.
   
   0.445
HCAG_06455
Importin subunit alpha; Belongs to the importin alpha family.
   
  
 0.440
HCAG_01604
Peptidase S59 domain-containing protein.
    
 
 0.414
HCAG_01605
Uncharacterized protein.
    
 
 0.414
Your Current Organism:
Histoplasma capsulatum NAm1
NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1
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