HCAG_07987 protein (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCAG_07987

ENTH domain-containing protein. (682 aa)

Predicted Functional Partners:

HCAG_04225

0.891

HCAG_02067

0.888

HCAG_01167

0.867

HCAG_06566

0.822

HCAG_05223

0.821

HCAG_05074

0.816

HCAG_02979

0.813

HCAG_00171

0.802

HCAG_01328

0.786

HCAG_06091

0.773

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00171	HCAG_01167	A6QS15	A6QUW1	Protein kinase domain-containing protein.	I/LWEQ domain-containing protein.	0.776
HCAG_00171	HCAG_01328	A6QS15	A6QVC1	Protein kinase domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.615
HCAG_00171	HCAG_02067	A6QS15	A6QXG0	Protein kinase domain-containing protein.	Uncharacterized protein.	0.884
HCAG_00171	HCAG_02979	A6QS15	A6R022	Protein kinase domain-containing protein.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.819
HCAG_00171	HCAG_04225	A6QS15	A6R3L7	Protein kinase domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.763
HCAG_00171	HCAG_05223	A6QS15	A6R6G5	Protein kinase domain-containing protein.	ENTH domain-containing protein.	0.498
HCAG_00171	HCAG_07987	A6QS15	A6REC2	Protein kinase domain-containing protein.	ENTH domain-containing protein.	0.802
HCAG_01167	HCAG_00171	A6QUW1	A6QS15	I/LWEQ domain-containing protein.	Protein kinase domain-containing protein.	0.776
HCAG_01167	HCAG_01328	A6QUW1	A6QVC1	I/LWEQ domain-containing protein.	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	0.953
HCAG_01167	HCAG_02067	A6QUW1	A6QXG0	I/LWEQ domain-containing protein.	Uncharacterized protein.	0.736
HCAG_01167	HCAG_04225	A6QUW1	A6R3L7	I/LWEQ domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.953
HCAG_01167	HCAG_05074	A6QUW1	A6R616	I/LWEQ domain-containing protein.	Synaptobrevin.	0.706
HCAG_01167	HCAG_05223	A6QUW1	A6R6G5	I/LWEQ domain-containing protein.	ENTH domain-containing protein.	0.888
HCAG_01167	HCAG_07987	A6QUW1	A6REC2	I/LWEQ domain-containing protein.	ENTH domain-containing protein.	0.867
HCAG_01328	HCAG_00171	A6QVC1	A6QS15	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Protein kinase domain-containing protein.	0.615
HCAG_01328	HCAG_01167	A6QVC1	A6QUW1	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	I/LWEQ domain-containing protein.	0.953
HCAG_01328	HCAG_02067	A6QVC1	A6QXG0	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Uncharacterized protein.	0.910
HCAG_01328	HCAG_02979	A6QVC1	A6R022	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.	0.894
HCAG_01328	HCAG_04225	A6QVC1	A6R3L7	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.999
HCAG_01328	HCAG_05074	A6QVC1	A6R616	Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.	Synaptobrevin.	0.737