HCAG_09201 protein (Histoplasma capsulatum NAm1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HCAG_09201

Uncharacterized protein. (64 aa)

Predicted Functional Partners:

HCAG_04686

0.667

HCAG_00783

0.621

HCAG_05805

0.576

HCAG_08176

0.576

HCAG_03758

0.526

HCAG_06817

0.512

HCAG_05282

0.511

HCAG_00806

0.509

HCAG_01398

0.509

HCAG_01481

0.509

Your Current Organism:

Histoplasma capsulatum NAm1

NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCAG_00783	HCAG_00806	A6QTS7	A6QTV0	Heat shock protein Hsp88.	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	0.841
HCAG_00783	HCAG_01398	A6QTS7	A6QVJ1	Heat shock protein Hsp88.	Heat shock 70 kDa protein 7.	0.835
HCAG_00783	HCAG_01481	A6QTS7	A6QVS4	Heat shock protein Hsp88.	Uncharacterized protein.	0.627
HCAG_00783	HCAG_03758	A6QTS7	A6R2A0	Heat shock protein Hsp88.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.799
HCAG_00783	HCAG_04686	A6QTS7	A6R4X8	Heat shock protein Hsp88.	ATP-dependent molecular chaperone HSC82.	0.955
HCAG_00783	HCAG_05282	A6QTS7	A6R6M4	Heat shock protein Hsp88.	HSF_DOMAIN domain-containing protein.	0.713
HCAG_00783	HCAG_05805	A6QTS7	A6RA17	Heat shock protein Hsp88.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.870
HCAG_00783	HCAG_08176	A6QTS7	A6REW1	Heat shock protein Hsp88.	Heat shock protein SSC1, mitochondrial; Belongs to the heat shock protein 70 family.	0.893
HCAG_00783	HCAG_09201	A6QTS7	A6RHS2	Heat shock protein Hsp88.	Uncharacterized protein.	0.621
HCAG_00806	HCAG_00783	A6QTV0	A6QTS7	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein Hsp88.	0.841
HCAG_00806	HCAG_03758	A6QTV0	A6R2A0	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.747
HCAG_00806	HCAG_04686	A6QTV0	A6R4X8	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	ATP-dependent molecular chaperone HSC82.	0.954
HCAG_00806	HCAG_05282	A6QTV0	A6R6M4	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	HSF_DOMAIN domain-containing protein.	0.716
HCAG_00806	HCAG_05805	A6QTV0	A6RA17	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock 70 kDa protein C; Belongs to the heat shock protein 70 family.	0.977
HCAG_00806	HCAG_08176	A6QTV0	A6REW1	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Heat shock protein SSC1, mitochondrial; Belongs to the heat shock protein 70 family.	0.603
HCAG_00806	HCAG_09201	A6QTV0	A6RHS2	Heat shock 70 kDa protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.509
HCAG_01398	HCAG_00783	A6QVJ1	A6QTS7	Heat shock 70 kDa protein 7.	Heat shock protein Hsp88.	0.835
HCAG_01398	HCAG_03758	A6QVJ1	A6R2A0	Heat shock 70 kDa protein 7.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.747
HCAG_01398	HCAG_04686	A6QVJ1	A6R4X8	Heat shock 70 kDa protein 7.	ATP-dependent molecular chaperone HSC82.	0.956
HCAG_01398	HCAG_05282	A6QVJ1	A6R6M4	Heat shock 70 kDa protein 7.	HSF_DOMAIN domain-containing protein.	0.716