STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MRPL454S ribosomal protein L4, mitochondrial; Belongs to the universal ribosomal protein uL29 family. (248 aa)    
Predicted Functional Partners:
HCAG_01949
Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.
   
 
 0.996
HCAG_02664
Uncharacterized protein.
   
 
 0.994
HCAG_00850
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.993
HCAG_02525
Uncharacterized protein.
   
 
 0.991
HCAG_03647
Uncharacterized protein.
   
 
 0.991
HCAG_06543
MRP-L46 domain-containing protein.
   
 
 0.991
HCAG_06028
Uncharacterized protein.
   
 
 0.991
HCAG_06104
Ribosomal_L30 domain-containing protein.
   
   0.991
HCAG_08072
Ribosomal protein L13.
   
 
 0.991
HCAG_00106
Uncharacterized protein.
   
 
 0.989
Your Current Organism:
Histoplasma capsulatum NAm1
NCBI taxonomy Id: 339724
Other names: Ajellomyces capsulatus NAm1, H. capsulatum NAm1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.