Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCAG_00511 | HCAG_00813 | A6QT05 | A6QTV7 | CID domain-containing protein. | 116 kDa U5 small nuclear ribonucleoprotein component. | 0.900 |
HCAG_00511 | HCAG_00976 | A6QT05 | A6QUC0 | CID domain-containing protein. | Pre-mRNA splicing factor cef-1. | 0.902 |
HCAG_00511 | HCAG_03643 | A6QT05 | A6R1Y5 | CID domain-containing protein. | Pre-mRNA splicing factor prp1. | 0.866 |
HCAG_00511 | HCAG_09348 | A6QT05 | A6XPM5 | CID domain-containing protein. | Helicase ATP-binding domain-containing protein. | 0.680 |
HCAG_00511 | MRH4 | A6QT05 | A6RCJ9 | CID domain-containing protein. | ATP-dependent RNA helicase MRH4, mitochondrial; ATP-binding RNA helicase involved in mitochondrial RNA metabolism. Required for maintenance of mitochondrial DNA (By similarity); Belongs to the DEAD box helicase family. MRH4 subfamily. | 0.678 |
HCAG_00813 | HCAG_00511 | A6QTV7 | A6QT05 | 116 kDa U5 small nuclear ribonucleoprotein component. | CID domain-containing protein. | 0.900 |
HCAG_00813 | HCAG_00976 | A6QTV7 | A6QUC0 | 116 kDa U5 small nuclear ribonucleoprotein component. | Pre-mRNA splicing factor cef-1. | 0.993 |
HCAG_00813 | HCAG_03643 | A6QTV7 | A6R1Y5 | 116 kDa U5 small nuclear ribonucleoprotein component. | Pre-mRNA splicing factor prp1. | 0.999 |
HCAG_00813 | HCAG_03993 | A6QTV7 | A6R2Y5 | 116 kDa U5 small nuclear ribonucleoprotein component. | Elongation factor 3. | 0.789 |
HCAG_00813 | HCAG_05088 | A6QTV7 | A6R630 | 116 kDa U5 small nuclear ribonucleoprotein component. | mRNA export factor elf1. | 0.786 |
HCAG_00813 | HCAG_06944 | A6QTV7 | A6R9F3 | 116 kDa U5 small nuclear ribonucleoprotein component. | ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. | 0.437 |
HCAG_00813 | MRH4 | A6QTV7 | A6RCJ9 | 116 kDa U5 small nuclear ribonucleoprotein component. | ATP-dependent RNA helicase MRH4, mitochondrial; ATP-binding RNA helicase involved in mitochondrial RNA metabolism. Required for maintenance of mitochondrial DNA (By similarity); Belongs to the DEAD box helicase family. MRH4 subfamily. | 0.648 |
HCAG_00976 | HCAG_00511 | A6QUC0 | A6QT05 | Pre-mRNA splicing factor cef-1. | CID domain-containing protein. | 0.902 |
HCAG_00976 | HCAG_00813 | A6QUC0 | A6QTV7 | Pre-mRNA splicing factor cef-1. | 116 kDa U5 small nuclear ribonucleoprotein component. | 0.993 |
HCAG_00976 | HCAG_03643 | A6QUC0 | A6R1Y5 | Pre-mRNA splicing factor cef-1. | Pre-mRNA splicing factor prp1. | 0.483 |
HCAG_00976 | MRH4 | A6QUC0 | A6RCJ9 | Pre-mRNA splicing factor cef-1. | ATP-dependent RNA helicase MRH4, mitochondrial; ATP-binding RNA helicase involved in mitochondrial RNA metabolism. Required for maintenance of mitochondrial DNA (By similarity); Belongs to the DEAD box helicase family. MRH4 subfamily. | 0.593 |
HCAG_03643 | HCAG_00511 | A6R1Y5 | A6QT05 | Pre-mRNA splicing factor prp1. | CID domain-containing protein. | 0.866 |
HCAG_03643 | HCAG_00813 | A6R1Y5 | A6QTV7 | Pre-mRNA splicing factor prp1. | 116 kDa U5 small nuclear ribonucleoprotein component. | 0.999 |
HCAG_03643 | HCAG_00976 | A6R1Y5 | A6QUC0 | Pre-mRNA splicing factor prp1. | Pre-mRNA splicing factor cef-1. | 0.483 |
HCAG_03643 | HCAG_09348 | A6R1Y5 | A6XPM5 | Pre-mRNA splicing factor prp1. | Helicase ATP-binding domain-containing protein. | 0.455 |
page 1 of 3