Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
HCAG_00954 | HCAG_02332 | A6QU98 | A6QY75 | Uncharacterized protein. | Sm domain-containing protein. | 0.999 |
HCAG_00954 | HCAG_08281 | A6QU98 | A6RF65 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.998 |
HCAG_00954 | LSM3 | A6QU98 | A6QYV7 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.998 |
HCAG_00954 | LSM4 | A6QU98 | A6R2Q1 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.998 |
HCAG_00954 | LSM5 | A6QU98 | A6R7U2 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. | 0.998 |
HCAG_00954 | LSM6 | A6QU98 | A6R363 | Uncharacterized protein. | U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] | 0.998 |
HCAG_02332 | HCAG_00954 | A6QY75 | A6QU98 | Sm domain-containing protein. | Uncharacterized protein. | 0.999 |
HCAG_02332 | HCAG_02553 | A6QY75 | A6QYU6 | Sm domain-containing protein. | Small nuclear ribonucleoprotein Sm D2. | 0.993 |
HCAG_02332 | HCAG_06101 | A6QY75 | A6RAW3 | Sm domain-containing protein. | Uncharacterized protein. | 0.989 |
HCAG_02332 | HCAG_08281 | A6QY75 | A6RF65 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
HCAG_02332 | HCAG_08871 | A6QY75 | A6RGV4 | Sm domain-containing protein. | Uncharacterized protein. | 0.990 |
HCAG_02332 | LSM3 | A6QY75 | A6QYV7 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
HCAG_02332 | LSM4 | A6QY75 | A6R2Q1 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
HCAG_02332 | LSM5 | A6QY75 | A6R7U2 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. | 0.999 |
HCAG_02332 | LSM6 | A6QY75 | A6R363 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm6; Component of LSm protein complexes, which are involved in RNA processing and may function in a chaperone-like manner, facilitating the efficient association of RNA processing factors with their substrates. Component of the cytoplasmic LSM1-LSM7 complex, which is thought to be involved in mRNA degradation by activating the decapping step in the 5'-to-3' mRNA decay pathway. Component of the nuclear LSM2- LSM8 complex, which is involved in splicing of nuclear mRNAs. LSM2-LSM8 associates with multiple snRNP complexes containing the U6 snRNA (U4/U6 [...] | 0.999 |
HCAG_02332 | LSM8 | A6QY75 | A6QWU7 | Sm domain-containing protein. | U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.999 |
HCAG_02553 | HCAG_02332 | A6QYU6 | A6QY75 | Small nuclear ribonucleoprotein Sm D2. | Sm domain-containing protein. | 0.993 |
HCAG_02553 | HCAG_06101 | A6QYU6 | A6RAW3 | Small nuclear ribonucleoprotein Sm D2. | Uncharacterized protein. | 0.986 |
HCAG_02553 | HCAG_08281 | A6QYU6 | A6RF65 | Small nuclear ribonucleoprotein Sm D2. | U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.998 |
HCAG_02553 | LSM3 | A6QYU6 | A6QYV7 | Small nuclear ribonucleoprotein Sm D2. | U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. | 0.992 |
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