STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Msp_0971Hypothetical protein; Related to transcriptional regulator. (214 aa)    
Predicted Functional Partners:
ftsZ
FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.687
Msp_0970
Hypothetical membrane-spanning protein; Pfam01976.
 
     0.621
Msp_0972
Hypothetical membrane-spanning protein.
 
   
 0.586
Msp_1068
Partially conserved hypothetical membrane-spanning protein; Related to phage infection protein; membrane protein.
 
  
 0.509
Msp_0159
Conserved hypothetical protein; Related to choline dehydrogenase; COG2303.
 
  
 0.439
Msp_0194
Predicted transcriptional regulator; COG1695, pfam03551.
  
  
 0.430
Msp_0289
Predicted ATPase; COG0037, pfam01171, cd01993.
  
 
 0.425
Msp_0331
Predicted ATPase; COG0037, pfam01171, cd01993.
  
 
 0.425
Msp_0823
Predicted transcriptional regulator; Smart00347.
 
  
 0.418
Your Current Organism:
Methanosphaera stadtmanae
NCBI taxonomy Id: 339860
Other names: M. stadtmanae DSM 3091, Methanosphaera stadtmanae ATCC 43021, Methanosphaera stadtmanae DSM 3091, Methanosphaera stadtmanae MCB-3, Methanosphaera stadtmanae str. DSM 3091, Methanosphaera stadtmanae strain DSM 3091
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.