Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001418255_00058 | mnmC | GCA_001418255_00058 | GCA_001418255_00059 | Unannotated protein; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family. | Unannotated protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.714 |
GCA_001418255_00109 | GCA_001418255_00618 | GCA_001418255_00109 | GCA_001418255_00618 | Unannotated protein. | Unannotated protein. | 0.825 |
GCA_001418255_00109 | GCA_001418255_01773 | GCA_001418255_00109 | GCA_001418255_01773 | Unannotated protein. | Unannotated protein. | 0.497 |
GCA_001418255_00109 | GCA_001418255_03065 | GCA_001418255_00109 | GCA_001418255_03065 | Unannotated protein. | Unannotated protein. | 0.568 |
GCA_001418255_00109 | gcvP | GCA_001418255_00109 | GCA_001418255_00107 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.999 |
GCA_001418255_00109 | mnmC | GCA_001418255_00109 | GCA_001418255_00059 | Unannotated protein. | Unannotated protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.918 |
GCA_001418255_00175 | GCA_001418255_00618 | GCA_001418255_00175 | GCA_001418255_00618 | Unannotated protein. | Unannotated protein. | 0.827 |
GCA_001418255_00175 | GCA_001418255_00836 | GCA_001418255_00175 | GCA_001418255_00836 | Unannotated protein. | Unannotated protein. | 0.778 |
GCA_001418255_00175 | GCA_001418255_02194 | GCA_001418255_00175 | GCA_001418255_02194 | Unannotated protein. | Unannotated protein. | 0.652 |
GCA_001418255_00175 | GCA_001418255_03065 | GCA_001418255_00175 | GCA_001418255_03065 | Unannotated protein. | Unannotated protein. | 0.815 |
GCA_001418255_00175 | gcvP | GCA_001418255_00175 | GCA_001418255_00107 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.711 |
GCA_001418255_00175 | mnmC | GCA_001418255_00175 | GCA_001418255_00059 | Unannotated protein. | Unannotated protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.696 |
GCA_001418255_00618 | GCA_001418255_00109 | GCA_001418255_00618 | GCA_001418255_00109 | Unannotated protein. | Unannotated protein. | 0.825 |
GCA_001418255_00618 | GCA_001418255_00175 | GCA_001418255_00618 | GCA_001418255_00175 | Unannotated protein. | Unannotated protein. | 0.827 |
GCA_001418255_00618 | GCA_001418255_00836 | GCA_001418255_00618 | GCA_001418255_00836 | Unannotated protein. | Unannotated protein. | 0.578 |
GCA_001418255_00618 | GCA_001418255_01773 | GCA_001418255_00618 | GCA_001418255_01773 | Unannotated protein. | Unannotated protein. | 0.554 |
GCA_001418255_00618 | GCA_001418255_02194 | GCA_001418255_00618 | GCA_001418255_02194 | Unannotated protein. | Unannotated protein. | 0.823 |
GCA_001418255_00618 | GCA_001418255_03065 | GCA_001418255_00618 | GCA_001418255_03065 | Unannotated protein. | Unannotated protein. | 0.816 |
GCA_001418255_00618 | gcvP | GCA_001418255_00618 | GCA_001418255_00107 | Unannotated protein. | Unannotated protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.807 |
GCA_001418255_00618 | mnmC | GCA_001418255_00618 | GCA_001418255_00059 | Unannotated protein. | Unannotated protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.814 |
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