STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418255_00404Unannotated protein. (785 aa)    
Predicted Functional Partners:
GCA_001418255_00405
Unannotated protein.
 
  
 0.952
GCA_001418255_01422
Unannotated protein.
 
  
 0.890
GCA_001418255_00401
Unannotated protein.
 
     0.873
GCA_001418255_00403
Unannotated protein.
       0.760
GCA_001418255_00402
Unannotated protein.
 
     0.756
GCA_001418255_01941
Unannotated protein.
  
  
 0.710
GCA_001418255_00414
Unannotated protein.
 
   
 0.697
GCA_001418255_00408
Unannotated protein.
 
     0.598
cbbL
Unannotated protein; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
   
 0.538
GCA_001418255_00407
Unannotated protein.
 
     0.521
Your Current Organism:
Thiomonas bhubaneswarensis
NCBI taxonomy Id: 339866
Other names: DSM 18181, JCM 14806, T. bhubaneswarensis, Thiomonas bhubaneswarensis Panda et al. 2009, Thiomonas sp. S10, strain S10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.