STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemCUnannotated protein; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. (318 aa)    
Predicted Functional Partners:
GCA_001418255_01280
Unannotated protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
 0.997
GCA_001418255_01281
Unannotated protein.
  
 0.997
GCA_001418255_02542
Unannotated protein; Belongs to the precorrin methyltransferase family.
 
 0.996
GCA_001418255_01067
Unannotated protein; Belongs to the ALAD family.
 
 0.993
hemE
Unannotated protein; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 0.993
hemA
Unannotated protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
  
 0.983
hemL
Unannotated protein.
 
  
 0.871
GCA_001418255_01282
Unannotated protein.
  
  
 0.784
GCA_001418255_00367
Unannotated protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.684
xseB
Unannotated protein; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
   
    0.617
Your Current Organism:
Thiomonas bhubaneswarensis
NCBI taxonomy Id: 339866
Other names: DSM 18181, JCM 14806, T. bhubaneswarensis, Thiomonas bhubaneswarensis Panda et al. 2009, Thiomonas sp. S10, strain S10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.