GCA_001418255_01937 protein (Thiomonas bhubaneswarensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GCA_001418255_01937

Unannotated protein. (374 aa)

Predicted Functional Partners:

GCA_001418255_01936

0.999

GCA_001418255_00130

0.994

GCA_001418255_00046

0.993

GCA_001418255_02348

0.993

msrP

0.988

GCA_001418255_01938

0.977

GCA_001418255_01939

0.966

GCA_001418255_01941

0.966

GCA_001418255_01942

0.963

GCA_001418255_01940

0.936

Your Current Organism:

Thiomonas bhubaneswarensis

NCBI taxonomy Id: 339866
Other names: DSM 18181, JCM 14806, T. bhubaneswarensis, Thiomonas bhubaneswarensis Panda et al. 2009, Thiomonas sp. S10, strain S10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_001418255_00046	GCA_001418255_00130	GCA_001418255_00046	GCA_001418255_00130	Unannotated protein.	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.512
GCA_001418255_00046	GCA_001418255_01936	GCA_001418255_00046	GCA_001418255_01936	Unannotated protein.	Unannotated protein.	0.546
GCA_001418255_00046	GCA_001418255_01937	GCA_001418255_00046	GCA_001418255_01937	Unannotated protein.	Unannotated protein.	0.993
GCA_001418255_00046	GCA_001418255_01938	GCA_001418255_00046	GCA_001418255_01938	Unannotated protein.	Unannotated protein.	0.647
GCA_001418255_00046	GCA_001418255_01939	GCA_001418255_00046	GCA_001418255_01939	Unannotated protein.	Unannotated protein.	0.613
GCA_001418255_00046	GCA_001418255_01940	GCA_001418255_00046	GCA_001418255_01940	Unannotated protein.	Unannotated protein.	0.716
GCA_001418255_00046	GCA_001418255_01941	GCA_001418255_00046	GCA_001418255_01941	Unannotated protein.	Unannotated protein.	0.663
GCA_001418255_00046	GCA_001418255_01942	GCA_001418255_00046	GCA_001418255_01942	Unannotated protein.	Unannotated protein; Belongs to the 5'-nucleotidase family.	0.624
GCA_001418255_00130	GCA_001418255_00046	GCA_001418255_00130	GCA_001418255_00046	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.512
GCA_001418255_00130	GCA_001418255_01936	GCA_001418255_00130	GCA_001418255_01936	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.512
GCA_001418255_00130	GCA_001418255_01937	GCA_001418255_00130	GCA_001418255_01937	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.994
GCA_001418255_00130	GCA_001418255_01940	GCA_001418255_00130	GCA_001418255_01940	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.992
GCA_001418255_00130	GCA_001418255_01941	GCA_001418255_00130	GCA_001418255_01941	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.642
GCA_001418255_00130	GCA_001418255_02348	GCA_001418255_00130	GCA_001418255_02348	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein.	0.512
GCA_001418255_00130	msrP	GCA_001418255_00130	GCA_001418255_00580	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	Unannotated protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) [...]	0.512
GCA_001418255_01936	GCA_001418255_00046	GCA_001418255_01936	GCA_001418255_00046	Unannotated protein.	Unannotated protein.	0.546
GCA_001418255_01936	GCA_001418255_00130	GCA_001418255_01936	GCA_001418255_00130	Unannotated protein.	Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).	0.512
GCA_001418255_01936	GCA_001418255_01937	GCA_001418255_01936	GCA_001418255_01937	Unannotated protein.	Unannotated protein.	0.999
GCA_001418255_01936	GCA_001418255_01938	GCA_001418255_01936	GCA_001418255_01938	Unannotated protein.	Unannotated protein.	0.944
GCA_001418255_01936	GCA_001418255_01939	GCA_001418255_01936	GCA_001418255_01939	Unannotated protein.	Unannotated protein.	0.919