STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC1850annotation not available (143 aa)    
Predicted Functional Partners:
XCC1849
annotation not available
     0.987
rpfD
Regulatory protein; Response regulator of the LytR/AlgR family
 
     0.779
XCC1848
annotation not available
 
    
0.663
XCC2826
annotation not available
  
     0.492
XCC2497
Oar protein; Outer membrane receptor proteins, mostly Fe transport
  
     0.489
XCC2828
Outer membrane receptor proteins mostly Fe transport
  
     0.474
XCC3965
annotation not available
  
     0.471
iroN
Outer membrane receptor proteins, mostly Fe transport
  
     0.457
XCC0119
Outer membrane receptor proteins mostly Fe transport
  
     0.439
XCC2827
annotation not available
  
     0.435
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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