STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN39883.1Capsular polysaccharide transport system ATP-binding protein. (217 aa)    
Predicted Functional Partners:
SEN39923.1
Capsular polysaccharide transport system permease protein.
 
 
 0.998
SEN14721.1
Capsular polysaccharide transport system permease protein.
 
 0.995
SEN96060.1
Capsular polysaccharide transport system permease protein.
 
 0.995
SEN14739.1
Capsular polysaccharide transport system permease protein.
 
 
 0.990
SEN66288.1
ABC-type polysaccharide/polyol phosphate export permease.
 
 0.990
SEN96090.1
Capsular polysaccharide transport system permease protein.
 
 
 0.968
SEO06453.1
Capsular polysaccharide export protein.
 
  
 0.950
SEO06445.1
Polysaccharide export outer membrane protein.
 
  
 0.941
SEN14765.1
Capsular polysaccharide transport system ATP-binding protein.
  
  
 
0.900
kdsA
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase); Belongs to the KdsA family.
  
    0.821
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.