STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN55514.1Transcriptional regulator, LacI family. (338 aa)    
Predicted Functional Partners:
SEN66023.1
Hypothetical protein.
   
 0.957
SEO22078.1
Two-component system, OmpR family, sensor histidine kinase TorS.
   
 0.957
SEN55335.1
Uncharacterized conserved protein YgbK, DUF1537 family.
 
     0.808
SEN55384.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
     0.808
SEN55361.1
Ribulose-bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family.
 
    0.739
SEN55467.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.683
SEN95393.1
Mannose ABC transporter ATP-binding protein.
  
  0.636
SEN36436.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
  
  0.633
SEN74520.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
    
 0.604
SEN55491.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.598
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.