STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN88275.1Type IV secretion system protein TrbL. (453 aa)    
Predicted Functional Partners:
SEN88215.1
Type IV secretion system protein VirB10.
 
  
 0.974
SEN88324.1
Type IV secretion system protein VirB4.
 
  
 0.971
SEN88236.1
Type IV secretion system protein VirB9.
 
  
 0.969
SEN88252.1
Type IV secretion system protein VirB5.
 
  
 0.969
SEN88352.1
Type IV secretion system protein VirB3.
 
  
 0.968
SEN88374.1
Type IV secretion system protein VirB2.
 
  
 0.968
SEN88315.1
P-type conjugative transfer protein TrbJ.
 
  
 0.965
SEN88198.1
Hypothetical protein.
 
     0.946
SEN88397.1
Type IV secretion system protein VirB11.
 
  
 0.939
SEN88291.1
Conjugative transfer region protein TrbK.
 
     0.931
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.