STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN95603.1Outer membrane transport energization protein ExbB. (213 aa)    
Predicted Functional Partners:
SEN95586.1
Biopolymer transport protein ExbD/TolR.
 
 
 0.968
SEN95574.1
Biopolymer transport protein ExbD.
  
 
 0.949
SEN95616.1
Hypothetical protein.
 
     0.932
SEN10554.1
Cell division and transport-associated protein TolR.
  
 
 0.912
SEN45431.1
Outer membrane transport energization protein ExbD.
  
 
 0.912
SEN45406.1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.877
SEN10579.1
Colicin import membrane protein.
  
 
 0.845
SEN95556.1
Hypothetical protein.
       0.790
SEN95637.1
Hypothetical protein.
       0.727
SEO35831.1
Hemoglobin/transferrin/lactoferrin receptor protein.
 
  
 0.615
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
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