STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO29810.1Transposase, IS5 family. (73 aa)    
Predicted Functional Partners:
SEN10103.1
Transposase DDE domain-containing protein.
 
     0.787
SEN96853.1
Transposase, IS5 family.
 
     0.786
SEO28877.1
Transposase, IS5 family.
 
     0.786
SEN96867.1
Transposase, IS5 family.
 
     0.785
SEO22500.1
Transposase, IS5 family.
 
     0.785
SEO22719.1
Transposase, IS5 family.
 
     0.785
SEO41811.1
Transposase, IS5 family.
 
     0.785
SEN86263.1
Transposase, IS5 family.
 
     0.778
SEN99400.1
Hypothetical protein.
 
     0.774
SEO29754.1
Peptide/nickel transport system permease protein.
       0.409
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.