STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO36830.1TnsA endonuclease N terminal. (174 aa)    
Predicted Functional Partners:
SEO36857.1
Mu transposase, C-terminal.
 
     0.948
SEN92587.1
Mu transposase, C-terminal.
 
     0.780
SEO36872.1
Helicase conserved C-terminal domain-containing protein.
       0.773
SEO31608.1
TniQ protein.
  
     0.556
SEN37630.1
Sarcosine oxidase subunit gamma.
  
     0.553
SEN15642.1
Hypothetical protein.
  
     0.408
Your Current Organism:
Paracoccus alcaliphilus
NCBI taxonomy Id: 34002
Other names: ATCC 51199, CIP 106073, DSM 8512, IFO 16719, JCM 7364, NBRC 16719, P. alcaliphilus, strain Urakami 0-100
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