Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUH85004.1 | xylR | TM5383_02226 | TM5383_00048 | Homoprotocatechuate degradation operon regulator, HpaR. | Xylose operon regulatory protein. | 0.414 |
| adaA | cdhR_2 | TM5383_01068 | TM5383_00478 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Carnitine catabolism transcriptional activator. | 0.580 |
| adaA | cdhR_3 | TM5383_01068 | TM5383_00989 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Carnitine catabolism transcriptional activator. | 0.622 |
| adaA | cdhR_4 | TM5383_01068 | TM5383_03164 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Carnitine catabolism transcriptional activator. | 0.658 |
| adaA | gltB | TM5383_01068 | TM5383_02290 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Glutamate synthase [NADPH] large chain precursor. | 0.743 |
| adaA | rpoA | TM5383_01068 | TM5383_01792 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.601 |
| adaA | rpoD | TM5383_01068 | TM5383_02997 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.405 |
| adaA | xylR | TM5383_01068 | TM5383_00048 | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | Xylose operon regulatory protein. | 0.634 |
| cdhR_2 | adaA | TM5383_00478 | TM5383_01068 | Carnitine catabolism transcriptional activator. | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | 0.580 |
| cdhR_2 | rpoD | TM5383_00478 | TM5383_02997 | Carnitine catabolism transcriptional activator. | Sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.553 |
| cdhR_2 | xylR | TM5383_00478 | TM5383_00048 | Carnitine catabolism transcriptional activator. | Xylose operon regulatory protein. | 0.436 |
| cdhR_3 | adaA | TM5383_00989 | TM5383_01068 | Carnitine catabolism transcriptional activator. | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | 0.622 |
| cdhR_3 | rpoD | TM5383_00989 | TM5383_02997 | Carnitine catabolism transcriptional activator. | Sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.553 |
| cdhR_3 | xylR | TM5383_00989 | TM5383_00048 | Carnitine catabolism transcriptional activator. | Xylose operon regulatory protein. | 0.557 |
| cdhR_4 | adaA | TM5383_03164 | TM5383_01068 | Carnitine catabolism transcriptional activator. | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | 0.658 |
| cdhR_4 | rpoD | TM5383_03164 | TM5383_02997 | Carnitine catabolism transcriptional activator. | Sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.553 |
| cdhR_4 | xylR | TM5383_03164 | TM5383_00048 | Carnitine catabolism transcriptional activator. | Xylose operon regulatory protein. | 0.642 |
| gltB | adaA | TM5383_02290 | TM5383_01068 | Glutamate synthase [NADPH] large chain precursor. | Methylphosphotriester-DNA--protein-cysteine S-methyltransferase. | 0.743 |
| gltB | rpoA | TM5383_02290 | TM5383_01792 | Glutamate synthase [NADPH] large chain precursor. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.415 |
| gltB | xylR | TM5383_02290 | TM5383_00048 | Glutamate synthase [NADPH] large chain precursor. | Xylose operon regulatory protein. | 0.743 |
page 1 of 2