STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ssuC_1Putative aliphatic sulfonates transport permease protein SsuC. (291 aa)    
Predicted Functional Partners:
tauB
Taurine import ATP-binding protein TauB.
 
 
 0.998
CUH82905.1
Hypothetical protein.
 
 
 0.965
CUH82906.1
NMT1/THI5 like protein.
 
 
 0.955
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
 
  
 
0.924
dht
D-hydantoinase/dihydropyrimidinase.
 
     0.834
CUH82902.1
Putative acetyltransferase.
       0.775
amaB
N-carbamoyl-L-amino acid hydrolase.
 
     0.621
preA
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
 
     0.580
rutR
Rut operon repressor.
 
     0.580
nrtA_1
Nitrate transport protein NrtA precursor.
  
 
 0.560
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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