STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH82991.1Rhomboid family protein. (231 aa)    
Predicted Functional Partners:
tatA
Twin arginine translocase protein A; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
 
 0.856
amiC_1
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
  
   0.825
CUH83018.1
Hypothetical protein.
  
     0.763
CUH84620.1
Hypothetical protein.
  
     0.762
CUH84728.1
Hypothetical protein.
  
     0.759
CUH83223.1
Hypothetical protein.
  
     0.748
CUH83822.1
Hypothetical protein.
  
     0.745
CUH84647.1
Hypothetical protein.
  
     0.735
CUH83476.1
Hypothetical protein.
 
     0.724
CUH83666.1
Hypothetical protein.
  
     0.716
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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