STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsE_1Type I secretion system membrane fusion protein PrsE. (450 aa)    
Predicted Functional Partners:
apxIB
RTX-I toxin determinant B.
 0.974
prsD_1
Type I secretion system ATP-binding protein PrsD.
  
 0.949
prsD_2
Type I secretion system ATP-binding protein PrsD.
  
 0.807
prsD_3
Type I secretion system ATP-binding protein PrsD.
  
 0.797
bepC
Outer membrane efflux protein BepC precursor.
 
 0.783
cya_4
Cyclolysin.
 
  
 0.749
CUH83004.1
Hypothetical protein.
 
     0.741
CUH83804.1
Type I secretion outer membrane protein, TolC family.
 
  0.726
hlyA
Hemolysin, chromosomal.
 
  
 0.723
cusC
Cation efflux system protein CusC precursor.
  
 0.720
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.