STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
robRight origin-binding protein. (255 aa)    
Predicted Functional Partners:
cdhR_4
Carnitine catabolism transcriptional activator.
  
     0.646
CUH83391.1
Fermentation/respiration switch protein; Belongs to the UPF0255 family.
 
     0.633
cdhR_2
Carnitine catabolism transcriptional activator.
  
     0.629
rpoD
Sigma-70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
   0.553
CUH83389.1
Hypothetical protein.
 
     0.531
dmlR_1
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
  
    0.420
hcaR
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
    0.416
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.