STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bepCOuter membrane efflux protein BepC precursor. (484 aa)    
Predicted Functional Partners:
prsE_3
Type I secretion system membrane fusion protein PrsE.
  
 0.994
mexA
Multidrug resistance protein MexA precursor.
  
 0.952
mdtA_1
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.898
mdtA_2
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.898
cusB
Cation efflux system protein CusB precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.898
cusC
Cation efflux system protein CusC precursor.
     
 0.836
apxIB
RTX-I toxin determinant B.
  
 
 0.812
czcA
Cation efflux system protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.797
ttgB
Putative efflux pump membrane transporter TtgB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.795
prsE_1
Type I secretion system membrane fusion protein PrsE.
 
 0.783
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.