STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vat_2Virginiamycin A acetyltransferase. (201 aa)    
Predicted Functional Partners:
ycjS
Putative oxidoreductase YcjS.
  
 
 0.620
ptk_1
Tyrosine-protein kinase ptk.
  
  
 0.509
cbs
Putative cystathionine beta-synthase.
    
 0.496
CUH83462.1
Putative pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.466
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.466
rifK
3-amino-5-hydroxybenzoate synthase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.466
algA_1
Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.462
algA_2
Alginate biosynthesis protein AlgA; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.462
garB
Glutathione amide reductase; Maintains high levels of reduced glutathione.
       0.434
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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