STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
outDPectic enzymes secretion protein OutD; Belongs to the bacterial secretin family. (476 aa)    
Predicted Functional Partners:
CUH83992.1
Flp pilus assembly protein CpaB.
 
  
 0.973
CUH84912.1
Flp pilus assembly protein CpaB.
 
  
 0.938
pal
15 kDa peptidoglycan-associated lipoprotein.
 
    0.936
minD_2
Cell division inhibitor MinD.
 
  
 0.931
CUH83998.1
Flp pilus assembly protein TadB.
 
  
 0.921
CUH83996.1
Putative conjugal transfer proteinc/MT3759.
  
 0.916
CUH83997.1
Flp pilus assembly protein TadB.
 
  
 0.903
CUH84000.1
Type IV pilus biogenesis/stability protein PilW.
 
  
 0.876
CUH83999.1
Putative PEP-CTERM system TPR-repeat lipoprotein.
 
  
 0.875
CUH84909.1
Flp pilus assembly protein TadB.
 
  
 0.874
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.