STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgRPectin degradation repressor protein KdgR. (264 aa)    
Predicted Functional Partners:
kipI
Sporulation inhibitor KipI.
  
    0.565
CUH84146.1
2-keto-3-deoxy-L-fuconate dehydrogenase.
 
    0.547
CUH84148.1
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.538
CUH83748.1
Putative metal-dependent hydrolase of the TIM-barrel fold protein.
 
    0.535
kipA
KipI antagonist.
  
    0.523
CUH84147.1
Ureidoglycolate lyase.
 
     0.513
iclR_2
Acetate operon repressor.
  
     0.505
kipR
Kip operon repressor protein.
  
     0.498
siaT_3
Neu5Ac permease.
 
  
  0.466
siaP
Neu5Ac-binding protein.
 
     0.428
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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