STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH84161.1Hypothetical protein. (280 aa)    
Predicted Functional Partners:
mmgC_3
Acyl-CoA dehydrogenase.
 
    0.939
frc_1
Formyl-coenzyme A transferase; Belongs to the CoA-transferase III family.
 
  0.918
citE
Citrate lyase subunit beta-like protein; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.909
CUH83141.1
2-methylcitrate dehydratase.
 
    0.737
CUH85209.1
Hypothetical protein.
  
  
 
0.728
cynR_4
Cyn operon transcriptional activator.
 
     0.706
sucC
Succinyl-CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
 
 
 
  0.673
CUH85208.1
Virulence protein.
  
    0.578
mcl2
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.473
mcl1
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.473
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.