STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dmlR_4D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
cmpR_2
HTH-type transcriptional activator CmpR; Belongs to the LysR transcriptional regulatory family.
  
     0.738
oxyR_2
Putative hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.689
cynR_2
Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.660
oxyR_1
Morphology and auto-aggregation control protein; Belongs to the LysR transcriptional regulatory family.
  
     0.633
CUH84285.1
Xanthine dehydrogenase accessory protein XdhC.
 
     0.615
dmlR_5
D-malate degradation protein R; Belongs to the LysR transcriptional regulatory family.
 
    
0.583
cynR_1
Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.529
pucE
Putative xanthine dehydrogenase subunit E.
       0.514
xdhA
Xanthine dehydrogenase molybdenum-binding subunit.
       0.504
yofA_1
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
     0.465
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.