STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptB_5Lipopolysaccharide export system ATP-binding protein LptB. (252 aa)    
Predicted Functional Partners:
lptG
Lipopolysaccharide export system permease protein LptG.
 
 
 0.999
CUH83228.1
Lipopolysaccharide ABC transporter permease.
 
 
 0.998
lptA
Lipopolysaccharide export system protein LptA precursor.
  
  
 0.978
CUH84051.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
      0.899
CUH84057.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
      0.875
cbiO
Cobalt import ATP-binding protein CbiO.
 
     
0.819
lpxA
Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.789
CUH84323.1
Organic solvent tolerance protein OstA.
       0.783
lpxD
UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.776
rnd_2
Ribonuclease D.
       0.752
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.