STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH84401.1Zn-ribbon-containing, possibly RNA-binding protein and truncated derivatives. (177 aa)    
Predicted Functional Partners:
bdbD_1
Thiol-disulfide oxidoreductase D.
       0.849
bbsF
Succinyl-CoA:(R)-benzylsuccinate CoA-transferase subunit BbsF; Belongs to the CoA-transferase III family.
       0.775
CUH83822.1
Hypothetical protein.
  
     0.712
mutY
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
       0.710
CUH83075.1
Dtr system oriT relaxase.
  
     0.673
CUH83018.1
Hypothetical protein.
  
     0.660
CUH84620.1
Hypothetical protein.
  
     0.651
CUH84809.1
Septum formation initiator.
  
     0.645
tatA
Twin arginine translocase protein A; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
     0.615
alkB2_2
Alkane 1-monooxygenase 2.
       0.614
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.