STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bktB_1Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)    
Predicted Functional Partners:
fadJ_1
Fatty acid oxidation complex subunit alpha.
 
 0.996
fadB_2
Fatty acid oxidation complex subunit alpha.
 
 0.995
fadJ_2
Fatty acid oxidation complex subunit alpha.
 
 0.995
fadB_3
Fatty acid oxidation complex subunit alpha; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.995
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.886
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
  
 
 0.871
lcdH_2
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
  
 0.761
echA8_2
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
  0.752
paaG_1
1,2-epoxyphenylacetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.750
fadB_1
Putative enoyl-CoA hydratase.
  
 0.750
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.