STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH84782.1Long-chain-fatty-acid--CoA ligase. (543 aa)    
Predicted Functional Partners:
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
 
 0.907
nqo1_1
NADH-quinone oxidoreductase subunit 1.
    
   0.866
aidB
Putative acyl-CoA dehydrogenase AidB.
 
 
  0.849
rplF
Hypothetical protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.777
dhbF
Dimodular nonribosomal peptide synthase.
 
0.772
grsA
Gramicidin S synthase I.
  0.767
fadB_2
Fatty acid oxidation complex subunit alpha.
 
 0.731
bbsG
(R)-benzylsuccinyl-CoA dehydrogenase.
  
 
  0.680
bktB_2
Beta-ketothiolase BktB; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
  0.671
CUH83491.1
Hypothetical protein.
    
  0.655
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.