STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvT_4Aminomethyltransferase; Belongs to the GcvT family. (1004 aa)    
Predicted Functional Partners:
CUH84883.1
Sarcosine oxidase, gamma subunit family.
 
 0.999
CUH84885.1
Sarcosine oxidase, delta subunit family.
 
 0.999
CUH83283.1
Sarcosine oxidase, delta subunit family.
 
 0.998
gcvP
Glycine dehydrogenase [decarboxylating]; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
 
 0.997
soxB_2
Sarcosine oxidase subunit beta.
 
 0.996
CUH83281.1
Sarcosine oxidase, gamma subunit family.
  
 0.995
soxB_1
Sarcosine oxidase subunit beta.
 
 0.990
gcvT_3
Aminomethyltransferase; Belongs to the GcvT family.
 
0.985
gcvT_5
Aminomethyltransferase; Belongs to the GcvT family.
 
0.985
gcvT_6
Aminomethyltransferase; Belongs to the GcvT family.
 
0.985
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.