Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUH83607.1 | bamA | TM5383_00802 | TM5383_02173 | SmpA / OmlA family protein. | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.900 |
CUH83607.1 | bamB | TM5383_00802 | TM5383_02089 | SmpA / OmlA family protein. | Outer membrane protein assembly factor BamB precursor. | 0.919 |
CUH83607.1 | bamD | TM5383_00802 | TM5383_02927 | SmpA / OmlA family protein. | Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.955 |
CUH84948.1 | CUH84951.1 | TM5383_02169 | TM5383_02172 | Hypothetical protein. | Outer membrane protein. | 0.685 |
CUH84948.1 | bamA | TM5383_02169 | TM5383_02173 | Hypothetical protein. | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.842 |
CUH84948.1 | fabZ | TM5383_02169 | TM5383_02171 | Hypothetical protein. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.848 |
CUH84948.1 | lpxA | TM5383_02169 | TM5383_02170 | Hypothetical protein. | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.961 |
CUH84948.1 | lpxB | TM5383_02169 | TM5383_02168 | Hypothetical protein. | Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.983 |
CUH84948.1 | lpxD | TM5383_02169 | TM5383_00387 | Hypothetical protein. | UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.797 |
CUH84951.1 | CUH84948.1 | TM5383_02172 | TM5383_02169 | Outer membrane protein. | Hypothetical protein. | 0.685 |
CUH84951.1 | bamA | TM5383_02172 | TM5383_02173 | Outer membrane protein. | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.939 |
CUH84951.1 | fabZ | TM5383_02172 | TM5383_02171 | Outer membrane protein. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.774 |
CUH84951.1 | lpxA | TM5383_02172 | TM5383_02170 | Outer membrane protein. | Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.787 |
CUH84951.1 | lpxB | TM5383_02172 | TM5383_02168 | Outer membrane protein. | Lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.685 |
CUH84951.1 | lpxD | TM5383_02172 | TM5383_00387 | Outer membrane protein. | UDP-3-O-acylglucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.754 |
CUH84951.1 | rseP | TM5383_02172 | TM5383_02175 | Outer membrane protein. | Regulator of sigma E protease. | 0.710 |
bamA | CUH83607.1 | TM5383_02173 | TM5383_00802 | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | SmpA / OmlA family protein. | 0.900 |
bamA | CUH84948.1 | TM5383_02173 | TM5383_02169 | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Hypothetical protein. | 0.842 |
bamA | CUH84951.1 | TM5383_02173 | TM5383_02172 | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein. | 0.939 |
bamA | bamB | TM5383_02173 | TM5383_02089 | Outer membrane protein Omp85; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein assembly factor BamB precursor. | 0.988 |
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