STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG_73-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)    
Predicted Functional Partners:
echA8_6
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.805
gno_1
Gluconate 5-dehydrogenase.
 
 
  0.796
CUH85121.1
Hypothetical protein.
       0.773
ppsE
Beta-ketoacyl-acyl-carrier-protein synthase I.
 
 
 0.607
grsA
Gramicidin S synthase I.
      0.599
acr1
Fatty acyl-CoA reductase.
  
     0.574
CUH85118.1
Hypothetical protein.
       0.552
CUH85123.1
Putative flavoprotein, family.
       0.518
kefA
Potassium efflux system KefA precursor.
       0.501
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
  0.450
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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