STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpA_2Sn-glycerol-3-phosphate transport system permease protein UgpA. (289 aa)    
Predicted Functional Partners:
sugB_2
Trehalose transport system permease protein SugB.
 0.995
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
 
 0.991
malK
Maltose/maltodextrin import ATP-binding protein MalK.
 
 0.991
CUH85248.1
Hypothetical protein.
 
 0.985
araQ_1
L-arabinose transport system permease protein AraQ; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 0.945
CUH85249.1
Putative small integral membrane protein.
 
    0.938
araQ_2
L-arabinose transport system permease protein AraQ.
 0.929
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
 
 0.908
ugpC_2
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.889
ugpB
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor.
  
 0.874
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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