Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
barA_2 | barA_3 | TM5383_02124 | TM5383_02573 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase BarA. | 0.999 |
barA_2 | cheA | TM5383_02124 | TM5383_02578 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheA. | 0.961 |
barA_2 | cheB3 | TM5383_02124 | TM5383_02582 | Signal transduction histidine-protein kinase BarA. | Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.937 |
barA_2 | cheR | TM5383_02124 | TM5383_02581 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.976 |
barA_2 | cheW_1 | TM5383_02124 | TM5383_02579 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheW. | 0.923 |
barA_2 | cheW_2 | TM5383_02124 | TM5383_02580 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheW. | 0.923 |
barA_2 | luxQ_2 | TM5383_02124 | TM5383_00790 | Signal transduction histidine-protein kinase BarA. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
barA_2 | luxQ_4 | TM5383_02124 | TM5383_00991 | Signal transduction histidine-protein kinase BarA. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.998 |
barA_2 | mcpA | TM5383_02124 | TM5383_00648 | Signal transduction histidine-protein kinase BarA. | Hypothetical protein; H1. | 0.675 |
barA_2 | rcsC_2 | TM5383_02124 | TM5383_01690 | Signal transduction histidine-protein kinase BarA. | Sensor kinase protein RcsC. | 0.999 |
barA_3 | barA_2 | TM5383_02573 | TM5383_02124 | Signal transduction histidine-protein kinase BarA. | Signal transduction histidine-protein kinase BarA. | 0.999 |
barA_3 | cheA | TM5383_02573 | TM5383_02578 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheA. | 0.987 |
barA_3 | cheB3 | TM5383_02573 | TM5383_02582 | Signal transduction histidine-protein kinase BarA. | Chemotaxis response regulator protein-glutamate methylesterase of group 3 operon; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.976 |
barA_3 | cheR | TM5383_02573 | TM5383_02581 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.970 |
barA_3 | cheW_1 | TM5383_02573 | TM5383_02579 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheW. | 0.980 |
barA_3 | cheW_2 | TM5383_02573 | TM5383_02580 | Signal transduction histidine-protein kinase BarA. | Chemotaxis protein CheW. | 0.979 |
barA_3 | luxQ_2 | TM5383_02573 | TM5383_00790 | Signal transduction histidine-protein kinase BarA. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
barA_3 | luxQ_4 | TM5383_02573 | TM5383_00991 | Signal transduction histidine-protein kinase BarA. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
barA_3 | mcpA | TM5383_02573 | TM5383_00648 | Signal transduction histidine-protein kinase BarA. | Hypothetical protein; H1. | 0.901 |
barA_3 | rcsC_2 | TM5383_02573 | TM5383_01690 | Signal transduction histidine-protein kinase BarA. | Sensor kinase protein RcsC. | 0.999 |
page 1 of 6