STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH85373.1Phenylacetate-coenzyme A ligase. (406 aa)    
Predicted Functional Partners:
CUH85371.1
Hypothetical protein.
 
    0.909
livF_6
LIV-I protein F.
 
 
  0.898
hmp
3-ketosteroid-9-alpha-hydroxylase reductase subunit.
  
 
 0.895
gatA_3
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
  0.858
gatA_1
Glutamyl-tRNA(Gln) amidotransferase subunit A.
    
  0.853
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A; Belongs to the amidase family.
    
  0.853
CUH85366.1
Long-chain-fatty-acid--CoA ligase FadD15.
 
    0.839
CUH85370.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
    0.839
cprA
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
  
 
 0.809
livH_6
LIV-I protein H; Belongs to the binding-protein-dependent transport system permease family.
 
    0.808
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.