STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cya_5Cyclolysin. (818 aa)    
Predicted Functional Partners:
algE7
Poly(beta-D-mannuronate) C5 epimerase 7.
  
  0.785
CUH84451.1
Hypothetical protein.
  
  0.718
cya_4
Cyclolysin.
  
 
0.697
hlyA
Hemolysin, chromosomal.
  
 
0.694
apxIA
Hemolysin IA.
  
 
0.690
cya_1
Cyclolysin.
  
 
0.679
CUH83673.1
Integration host factor subunit alpha.
  
     0.677
prsE_2
Type I secretion system membrane fusion protein PrsE.
 
    0.672
cya_3
Cyclolysin.
  
 
0.669
cya_2
Cyclolysin.
  
 
0.666
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.