STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobS_2Aerobic cobaltochelatase subunit CobS. (328 aa)    
Predicted Functional Partners:
cobT
Aerobic cobaltochelatase subunit CobT.
 
 
 0.999
cobN
Aerobic cobaltochelatase subunit CobN.
     
 0.899
dnaJ_2
Heat shock protein J.
 
     0.590
CUH84590.1
ATP12 chaperone protein.
  
     0.524
CUH82832.1
Hypothetical protein.
  
     0.473
CUH85683.1
Nitronate monooxygenase.
       0.473
atpF
F-type ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.465
lysS
Lysine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
     0.456
CUH85518.1
Hypothetical protein.
  
     0.432
CUH82978.1
GcrA cell cycle regulator.
  
     0.419
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.