STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (227 aa)    
Predicted Functional Partners:
lolC
Lipoprotein-releasing system transmembrane protein LolC.
 0.999
prsE_3
Type I secretion system membrane fusion protein PrsE.
  
 
 0.976
CUH85139.1
Lipoprotein chaperone; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.960
oppD
Stage 0 sporulation protein KD; Belongs to the ABC transporter superfamily.
 
    
0.905
modB_2
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.860
oppF
Stage 0 sporulation protein KE; Belongs to the ABC transporter superfamily.
 
    
0.846
nrtA_2
Nitrate transport protein NrtA precursor.
 
      0.811
glnM_1
Putative glutamine ABC transporter permease protein GlnM.
 
 
 
 0.773
nrtA_1
Nitrate transport protein NrtA precursor.
 
      0.765
mdtA_1
Multidrug transporter MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.705
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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