STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH86064.1Type IV secretion system protein VirB11. (328 aa)    
Predicted Functional Partners:
virB9
Type IV secretion system protein virB9 precursor.
  
 0.983
virB4
Type IV secretion system protein virB4.
  
 0.978
ptlG
Pertussis toxin liberation protein G.
 
  
 0.976
virB2
Type IV secretion system protein virB2 precursor.
 
  
 0.948
CUH86067.1
Type IV secretion system protein VirB8.
 
     0.946
virB6
Type IV secretion system protein VirB6.
 
     0.940
slt_4
Soluble lytic murein transglycosylase precursor.
 
    0.939
CUH86068.1
P-type DNA transfer protein VirB5.
 
    0.935
CUH86072.1
Type IV secretion system protein VirB3.
 
     0.932
CUH84908.1
Flp pilus assembly protein TadB.
 
  
 0.855
Your Current Organism:
Thalassobius mediterraneus
NCBI taxonomy Id: 340021
Other names: CCUG 49438, CECT 5383, CIP 108400, DSM 16398, T. mediterraneus, Thalassobius mediterraneus Arahal et al. 2005, strain XSM19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.