STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ImpJType VI secretion system protein ImpJ. (444 aa)    
Predicted Functional Partners:
ImpK
Type VI secretion system protein ImpK.
 
  
 0.993
IcmL
Type VI secretion system protein ImpL.
 
  
 0.975
ImpG
Type VI secretion system protein ImpG.
 
 
 0.967
ImpM
Type VI secretion-associated protein, BMA_A0400 family.
 
  
 0.962
ImpB
Type VI secretion system protein ImpB.
 
  
 0.961
SFH46132.1
Serine/threonine protein kinase.
 
  
 0.948
SFH46152.1
Protein phosphatase.
 
  
 0.947
ImpC
Type VI secretion system protein ImpC.
 
  
 0.904
ImpH
Type VI secretion system protein ImpH.
 
  
 0.901
ImpF
Type VI secretion system protein ImpF.
 
  
 0.900
Your Current Organism:
Paracoccus aminovorans
NCBI taxonomy Id: 34004
Other names: ATCC 49632, CIP 106076, DSM 8537, IFO 16711, JCM 7685, NBRC 16711, P. aminovorans, Paracoccus aminivorans, VKM B-2140, strain DM-82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.